From c1e60e1a907b39535629a0bbbe95ea353c3fbd51 Mon Sep 17 00:00:00 2001
From: jkiederle <jana.kiederle@fau.de>
Date: Fri, 8 Apr 2022 08:34:42 +0200
Subject: [PATCH] changed the notation of scalability stuff
---
.../100/100_0/{0.txt => 1.txt} | 0
.../100/100_2/{2.txt => 1.txt} | 0
.../100/100_3/{3.txt => 1.txt} | 0
.../100/100_4/{4.txt => 1.txt} | 0
.../20/20_0/{0.txt => 1.txt} | 0
.../20/20_2/{2.txt => 1.txt} | 0
.../20/20_3/{3.txt => 1.txt} | 0
.../20/20_4/{4.txt => 1.txt} | 0
.../40/40_0/{0.txt => 1.txt} | 0
.../40/40_2/{2.txt => 1.txt} | 0
.../40/40_3/{3.txt => 1.txt} | 0
.../40/40_4/{4.txt => 1.txt} | 0
.../60/60_0/{0.txt => 1.txt} | 0
.../60/60_2/{2.txt => 1.txt} | 0
.../60/60_3/{3.txt => 1.txt} | 0
.../60/60_4/{4.txt => 1.txt} | 0
.../80/80_0/{0.txt => 1.txt} | 0
.../80/80_2/{2.txt => 1.txt} | 0
.../80/80_3/{3.txt => 1.txt} | 0
.../80/80_4/{4.txt => 1.txt} | 0
.../100/100_0/{0.gml => 1.gml} | 0
.../100/100_2/{2.gml => 1.gml} | 0
.../100/100_3/{3.gml => 1.gml} | 0
.../100/100_4/{4.gml => 1.gml} | 0
.../tree_blocks_gml/20/20_0/{0.gml => 1.gml} | 0
.../tree_blocks_gml/20/20_2/{2.gml => 1.gml} | 0
.../tree_blocks_gml/20/20_3/{3.gml => 1.gml} | 0
.../tree_blocks_gml/20/20_4/{4.gml => 1.gml} | 0
.../tree_blocks_gml/40/40_0/{0.gml => 1.gml} | 0
.../tree_blocks_gml/40/40_2/{2.gml => 1.gml} | 0
.../tree_blocks_gml/40/40_3/{3.gml => 1.gml} | 0
.../tree_blocks_gml/40/40_4/{4.gml => 1.gml} | 0
.../tree_blocks_gml/60/60_0/{0.gml => 1.gml} | 0
.../tree_blocks_gml/60/60_2/{2.gml => 1.gml} | 0
.../tree_blocks_gml/60/60_3/{3.gml => 1.gml} | 0
.../tree_blocks_gml/60/60_4/{4.gml => 1.gml} | 0
.../tree_blocks_gml/80/80_0/{0.gml => 1.gml} | 0
.../tree_blocks_gml/80/80_2/{2.gml => 1.gml} | 0
.../tree_blocks_gml/80/80_3/{3.gml => 1.gml} | 0
.../tree_blocks_gml/80/80_4/{4.gml => 1.gml} | 0
.../comparison_matrices_eval.ipynb | 22 +++++++++----------
...nces_old => test_compute_distances_old.py} | 0
42 files changed, 11 insertions(+), 11 deletions(-)
rename all_other_data/scalability_trees/tree_blocks_bracket/100/100_0/{0.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/100/100_2/{2.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/100/100_3/{3.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/100/100_4/{4.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/20/20_0/{0.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/20/20_2/{2.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/20/20_3/{3.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/20/20_4/{4.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/40/40_0/{0.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/40/40_2/{2.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/40/40_3/{3.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/40/40_4/{4.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/60/60_0/{0.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/60/60_2/{2.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/60/60_3/{3.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/60/60_4/{4.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/80/80_0/{0.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/80/80_2/{2.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/80/80_3/{3.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_bracket/80/80_4/{4.txt => 1.txt} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/100/100_0/{0.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/100/100_2/{2.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/100/100_3/{3.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/100/100_4/{4.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/20/20_0/{0.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/20/20_2/{2.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/20/20_3/{3.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/20/20_4/{4.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/40/40_0/{0.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/40/40_2/{2.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/40/40_3/{3.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/40/40_4/{4.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/60/60_0/{0.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/60/60_2/{2.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/60/60_3/{3.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/60/60_4/{4.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/80/80_0/{0.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/80/80_2/{2.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/80/80_3/{3.gml => 1.gml} (100%)
rename all_other_data/scalability_trees/tree_blocks_gml/80/80_4/{4.gml => 1.gml} (100%)
rename notebooks_python/{test_compute_distances_old => test_compute_distances_old.py} (100%)
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/100/100_0/0.txt b/all_other_data/scalability_trees/tree_blocks_bracket/100/100_0/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/100/100_0/0.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/100/100_0/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/100/100_2/2.txt b/all_other_data/scalability_trees/tree_blocks_bracket/100/100_2/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/100/100_2/2.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/100/100_2/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/100/100_3/3.txt b/all_other_data/scalability_trees/tree_blocks_bracket/100/100_3/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/100/100_3/3.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/100/100_3/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/100/100_4/4.txt b/all_other_data/scalability_trees/tree_blocks_bracket/100/100_4/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/100/100_4/4.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/100/100_4/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/20/20_0/0.txt b/all_other_data/scalability_trees/tree_blocks_bracket/20/20_0/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/20/20_0/0.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/20/20_0/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/20/20_2/2.txt b/all_other_data/scalability_trees/tree_blocks_bracket/20/20_2/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/20/20_2/2.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/20/20_2/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/20/20_3/3.txt b/all_other_data/scalability_trees/tree_blocks_bracket/20/20_3/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/20/20_3/3.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/20/20_3/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/20/20_4/4.txt b/all_other_data/scalability_trees/tree_blocks_bracket/20/20_4/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/20/20_4/4.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/20/20_4/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/40/40_0/0.txt b/all_other_data/scalability_trees/tree_blocks_bracket/40/40_0/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/40/40_0/0.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/40/40_0/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/40/40_2/2.txt b/all_other_data/scalability_trees/tree_blocks_bracket/40/40_2/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/40/40_2/2.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/40/40_2/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/40/40_3/3.txt b/all_other_data/scalability_trees/tree_blocks_bracket/40/40_3/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/40/40_3/3.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/40/40_3/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/40/40_4/4.txt b/all_other_data/scalability_trees/tree_blocks_bracket/40/40_4/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/40/40_4/4.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/40/40_4/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/60/60_0/0.txt b/all_other_data/scalability_trees/tree_blocks_bracket/60/60_0/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/60/60_0/0.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/60/60_0/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/60/60_2/2.txt b/all_other_data/scalability_trees/tree_blocks_bracket/60/60_2/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/60/60_2/2.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/60/60_2/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/60/60_3/3.txt b/all_other_data/scalability_trees/tree_blocks_bracket/60/60_3/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/60/60_3/3.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/60/60_3/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/60/60_4/4.txt b/all_other_data/scalability_trees/tree_blocks_bracket/60/60_4/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/60/60_4/4.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/60/60_4/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/80/80_0/0.txt b/all_other_data/scalability_trees/tree_blocks_bracket/80/80_0/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/80/80_0/0.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/80/80_0/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/80/80_2/2.txt b/all_other_data/scalability_trees/tree_blocks_bracket/80/80_2/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/80/80_2/2.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/80/80_2/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/80/80_3/3.txt b/all_other_data/scalability_trees/tree_blocks_bracket/80/80_3/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/80/80_3/3.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/80/80_3/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_bracket/80/80_4/4.txt b/all_other_data/scalability_trees/tree_blocks_bracket/80/80_4/1.txt
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_bracket/80/80_4/4.txt
rename to all_other_data/scalability_trees/tree_blocks_bracket/80/80_4/1.txt
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/100/100_0/0.gml b/all_other_data/scalability_trees/tree_blocks_gml/100/100_0/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/100/100_0/0.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/100/100_0/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/100/100_2/2.gml b/all_other_data/scalability_trees/tree_blocks_gml/100/100_2/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/100/100_2/2.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/100/100_2/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/100/100_3/3.gml b/all_other_data/scalability_trees/tree_blocks_gml/100/100_3/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/100/100_3/3.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/100/100_3/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/100/100_4/4.gml b/all_other_data/scalability_trees/tree_blocks_gml/100/100_4/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/100/100_4/4.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/100/100_4/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/20/20_0/0.gml b/all_other_data/scalability_trees/tree_blocks_gml/20/20_0/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/20/20_0/0.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/20/20_0/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/20/20_2/2.gml b/all_other_data/scalability_trees/tree_blocks_gml/20/20_2/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/20/20_2/2.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/20/20_2/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/20/20_3/3.gml b/all_other_data/scalability_trees/tree_blocks_gml/20/20_3/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/20/20_3/3.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/20/20_3/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/20/20_4/4.gml b/all_other_data/scalability_trees/tree_blocks_gml/20/20_4/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/20/20_4/4.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/20/20_4/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/40/40_0/0.gml b/all_other_data/scalability_trees/tree_blocks_gml/40/40_0/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/40/40_0/0.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/40/40_0/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/40/40_2/2.gml b/all_other_data/scalability_trees/tree_blocks_gml/40/40_2/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/40/40_2/2.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/40/40_2/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/40/40_3/3.gml b/all_other_data/scalability_trees/tree_blocks_gml/40/40_3/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/40/40_3/3.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/40/40_3/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/40/40_4/4.gml b/all_other_data/scalability_trees/tree_blocks_gml/40/40_4/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/40/40_4/4.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/40/40_4/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/60/60_0/0.gml b/all_other_data/scalability_trees/tree_blocks_gml/60/60_0/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/60/60_0/0.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/60/60_0/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/60/60_2/2.gml b/all_other_data/scalability_trees/tree_blocks_gml/60/60_2/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/60/60_2/2.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/60/60_2/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/60/60_3/3.gml b/all_other_data/scalability_trees/tree_blocks_gml/60/60_3/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/60/60_3/3.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/60/60_3/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/60/60_4/4.gml b/all_other_data/scalability_trees/tree_blocks_gml/60/60_4/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/60/60_4/4.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/60/60_4/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/80/80_0/0.gml b/all_other_data/scalability_trees/tree_blocks_gml/80/80_0/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/80/80_0/0.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/80/80_0/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/80/80_2/2.gml b/all_other_data/scalability_trees/tree_blocks_gml/80/80_2/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/80/80_2/2.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/80/80_2/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/80/80_3/3.gml b/all_other_data/scalability_trees/tree_blocks_gml/80/80_3/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/80/80_3/3.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/80/80_3/1.gml
diff --git a/all_other_data/scalability_trees/tree_blocks_gml/80/80_4/4.gml b/all_other_data/scalability_trees/tree_blocks_gml/80/80_4/1.gml
similarity index 100%
rename from all_other_data/scalability_trees/tree_blocks_gml/80/80_4/4.gml
rename to all_other_data/scalability_trees/tree_blocks_gml/80/80_4/1.gml
diff --git a/notebooks_python/comparison_matrices_eval.ipynb b/notebooks_python/comparison_matrices_eval.ipynb
index 4d87b49..6f03582 100644
--- a/notebooks_python/comparison_matrices_eval.ipynb
+++ b/notebooks_python/comparison_matrices_eval.ipynb
@@ -2,7 +2,7 @@
"cells": [
{
"cell_type": "code",
- "execution_count": 56,
+ "execution_count": 1,
"metadata": {},
"outputs": [],
"source": [
@@ -1893,19 +1893,19 @@
},
{
"cell_type": "code",
- "execution_count": 50,
+ "execution_count": 5,
"metadata": {},
"outputs": [],
"source": [
"algorithm_small = 'approx'\n",
"algorithm = \"4-APPROX\"\n",
"max_n = 20\n",
- "path = \"/home/jana/Documents/BIONETs/Code/tree_match_approx_validator/final_results_data/results/scalability_\" + algorithm_small + \"/\" + str(max_n + \"_results_\" + algorithm + \"_Mar_29_2022-11_07/df_times_\" + algorithm + \".csv\""
+ "path = \"/home/jana/Documents/BIONETs/Code/tree_match_approx_validator/final_results_data/results/scalability_\" + algorithm_small + \"/\" + str(max_n) + \"_results_\" + algorithm + \"_Mar_29_2022-11_07/df_times_\" + algorithm + \".csv\""
]
},
{
"cell_type": "code",
- "execution_count": 78,
+ "execution_count": 10,
"metadata": {},
"outputs": [],
"source": [
@@ -1913,8 +1913,8 @@
"\n",
"def get_times_dict(algorithm, algorithm_small):\n",
" times_dict = {}\n",
- " for max_n in [20,40,60,80,100]:\n",
- " path = \"/home/jana/Documents/BIONETs/Code/tree_match_approx_validator/final_results_data/results/scalability_\" + algorithm_small + \"/\" + str(max_n) + \"_results_\" + algorithm + \"_Mar_29_2022-11_11/df_times_\" + algorithm + \".csv\"\n",
+ " for max_n in [20,40]:\n",
+ " path = \"/home/jana/Documents/BIONETs/Code/tree_match_approx_validator/final_results_data/results/scalability_\" + algorithm_small + \"/\" + str(max_n) + \"_results_\" + algorithm + \"_Mar_30_2022-22_58/df_times_\" + algorithm + \".csv\"\n",
" df = pd.read_csv(path, index_col=0)\n",
" df_np = df.to_numpy()\n",
" block_times = df_np[df_np>0]\n",
@@ -1924,23 +1924,23 @@
},
{
"cell_type": "code",
- "execution_count": 80,
+ "execution_count": 11,
"metadata": {},
"outputs": [],
"source": [
- "algorithm_small = 'tree_edit_dist'\n",
- "algorithm = \"TREE-EDIT-DIST\"\n",
+ "algorithm_small = 'gurobi'\n",
+ "algorithm = \"GUROBI\"\n",
"times_dict = get_times_dict(algorithm, algorithm_small)\n"
]
},
{
"cell_type": "code",
- "execution_count": 81,
+ "execution_count": 12,
"metadata": {},
"outputs": [
{
"data": {
- "image/png": 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",
+ "image/png": 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",
"text/plain": [
"<Figure size 432x288 with 1 Axes>"
]
diff --git a/notebooks_python/test_compute_distances_old b/notebooks_python/test_compute_distances_old.py
similarity index 100%
rename from notebooks_python/test_compute_distances_old
rename to notebooks_python/test_compute_distances_old.py
--
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