Initial git commit - extract template from my thesis

.gitignore

+
+# Created by https://www.toptal.com/developers/gitignore/api/latex
+# Edit at https://www.toptal.com/developers/gitignore?templates=latex
+
+### LaTeX ###
+## Core latex/pdflatex auxiliary files:
+*.aux
+*.lof
+*.log
+*.lot
+*.fls
+*.out
+*.toc
+*.fmt
+*.fot
+*.cb
+*.cb2
+.*.lb
+
+## Intermediate documents:
+*.dvi
+*.xdv
+*-converted-to.*
+# these rules might exclude image files for figures etc.
+# *.ps
+# *.eps
+# *.pdf
+
+## Generated if empty string is given at "Please type another file name for output:"
+.pdf
+
+## Bibliography auxiliary files (bibtex/biblatex/biber):
+*.bbl
+*.bcf
+*.blg
+*-blx.aux
+*-blx.bib
+*.run.xml
+
+## Build tool auxiliary files:
+*.fdb_latexmk
+*.synctex
+*.synctex(busy)
+*.synctex.gz
+*.synctex.gz(busy)
+*.pdfsync
+
+## Build tool directories for auxiliary files
+# latexrun
+latex.out/
+
+## Auxiliary and intermediate files from other packages:
+# algorithms
+*.alg
+*.loa
+
+# achemso
+acs-*.bib
+
+# amsthm
+*.thm
+
+# beamer
+*.nav
+*.pre
+*.snm
+*.vrb
+
+# changes
+*.soc
+
+# comment
+*.cut
+
+# cprotect
+*.cpt
+
+# elsarticle (documentclass of Elsevier journals)
+*.spl
+
+# endnotes
+*.ent
+
+# fixme
+*.lox
+
+# feynmf/feynmp
+*.mf
+*.mp
+*.t[1-9]
+*.t[1-9][0-9]
+*.tfm
+
+#(r)(e)ledmac/(r)(e)ledpar
+*.end
+*.?end
+*.[1-9]
+*.[1-9][0-9]
+*.[1-9][0-9][0-9]
+*.[1-9]R
+*.[1-9][0-9]R
+*.[1-9][0-9][0-9]R
+*.eledsec[1-9]
+*.eledsec[1-9]R
+*.eledsec[1-9][0-9]
+*.eledsec[1-9][0-9]R
+*.eledsec[1-9][0-9][0-9]
+*.eledsec[1-9][0-9][0-9]R
+
+# glossaries
+*.acn
+*.acr
+*.glg
+*.glo
+*.gls
+*.glsdefs
+*.lzo
+*.lzs
+
+# uncomment this for glossaries-extra (will ignore makeindex's style files!)
+# *.ist
+
+# gnuplottex
+*-gnuplottex-*
+
+# gregoriotex
+*.gaux
+*.glog
+*.gtex
+
+# htlatex
+*.4ct
+*.4tc
+*.idv
+*.lg
+*.trc
+*.xref
+
+# hyperref
+*.brf
+
+# knitr
+*-concordance.tex
+# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
+# *.tikz
+*-tikzDictionary
+
+# listings
+*.lol
+
+# luatexja-ruby
+*.ltjruby
+
+# makeidx
+*.idx
+*.ilg
+*.ind
+
+# minitoc
+*.maf
+*.mlf
+*.mlt
+*.mtc[0-9]*
+*.slf[0-9]*
+*.slt[0-9]*
+*.stc[0-9]*
+
+# minted
+_minted*
+*.pyg
+
+# morewrites
+*.mw
+
+# newpax
+*.newpax
+
+# nomencl
+*.nlg
+*.nlo
+*.nls
+
+# pax
+*.pax
+
+# pdfpcnotes
+*.pdfpc
+
+# sagetex
+*.sagetex.sage
+*.sagetex.py
+*.sagetex.scmd
+
+# scrwfile
+*.wrt
+
+# sympy
+*.sout
+*.sympy
+sympy-plots-for-*.tex/
+
+# pdfcomment
+*.upa
+*.upb
+
+# pythontex
+*.pytxcode
+pythontex-files-*/
+
+# tcolorbox
+*.listing
+
+# thmtools
+*.loe
+
+# TikZ & PGF
+*.dpth
+*.md5
+*.auxlock
+
+# todonotes
+*.tdo
+
+# vhistory
+*.hst
+*.ver
+
+# easy-todo
+*.lod
+
+# xcolor
+*.xcp
+
+# xmpincl
+*.xmpi
+
+# xindy
+*.xdy
+
+# xypic precompiled matrices and outlines
+*.xyc
+*.xyd
+
+# endfloat
+*.ttt
+*.fff
+
+# Latexian
+TSWLatexianTemp*
+
+## Editors:
+# WinEdt
+*.bak
+*.sav
+
+# Texpad
+.texpadtmp
+
+# LyX
+*.lyx~
+
+# Kile
+*.backup
+
+# gummi
+.*.swp
+
+# KBibTeX
+*~[0-9]*
+
+# TeXnicCenter
+*.tps
+
+# auto folder when using emacs and auctex
+./auto/*
+*.el
+
+# expex forward references with \gathertags
+*-tags.tex
+
+# standalone packages
+*.sta
+
+# Makeindex log files
+*.lpz
+
+# xwatermark package
+*.xwm
+
+# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
+# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
+# Uncomment the next line to have this generated file ignored.
+#*Notes.bib
+
+### LaTeX Patch ###
+# LIPIcs / OASIcs
+*.vtc
+
+# glossaries
+*.glstex
+
+# End of https://www.toptal.com/developers/gitignore/api/latex
+thesis*.pdf
+.vscode
+__pycache__/

.gitlab-ci.yml

+---
+
+variables:
+  GIT_SUBMODULE_STRATEGY: recursive
+
+# image: aergus/latex
+image: laurenss/texlive-full:rolling
+before_script:
+  - apt-get update
+  - apt-get install librsvg2-bin
+
+render-paper:
+  script:
+    - make -j || true
+    - make -j
+  artifacts:
+    paths:
+      - thesis.pdf
+    expire_in: 4 days
+
+release-paper:
+  script:
+    - make -j || true
+    - make -j
+  artifacts:
+    paths:
+      - thesis.pdf
+    expire_in: 2 years
+  only:
+    - tags
+
+...

00-abstract.tex

+%! TEX root = thesis.tex
+
+\chapter*{Abstract}
+\addcontentsline{toc}{chapter}{Abstract}
+\begin{otherlanguage*}{american}
+
+    about 1/2 page:   \\
+    (1) Motivation (Why do we care?)   \\
+    (2) Problem statement (What problem are we trying to solve?)   \\
+    (3) Approach (How did we go about it)   \\
+    (4) Results (What's the answer?)   \\
+    (5) Conclusion (What are the implications of the answer?)
+
+\end{otherlanguage*}
+
+
+\chapter*{Kurzfassung}
+\addcontentsline{toc}{chapter}{Kurzfassung}
+\begin{otherlanguage*}{ngerman}
+
+    Gleicher Text in Deutsch
+
+\end{otherlanguage*}

01-introduction.tex

+%! TEX root = thesis.tex
+
+\chapter{Introduction}%
+%\chapter{Einleitung}
+\label{sec:introduction}
+
+general motivation for your work, context and goals: 1-2 pages
+
+\begin{itemize}
+    \item \textbf{Context:} make sure to link where your work fits in
+    \item \textbf{Problem:} gap in knowledge, too expensive, too slow, a deficiency, superseded technology
+    \item \textbf{Strategy:} the way you will address the problem
+\end{itemize}
+
+\section{Sample Section}%
+\label{sec:sample-section}
+
+The following samples explain how to insert cross-references, figures and tables, how to set math, algorithms and program code, how to add references, and how to use acronyms.
+
+
+\subsection{Cross References}%
+\label{sec:cross-ref}
+
+Use the \verb|\label| and \verb|\cref| commands for cross references, e.g.\ to \cref{sec:cross-ref}.
+
+\subsection{Figures}%
+\label{sec:figures}
+
+\Cref{fig:setup0} shows the distribution of the nodes in the sample setup at time $t=0$, as well as the initial coverage with a sensing radius of \SI{30}{\metre} and the communication graph for a communication range of \SI{50}{\metre}.
+
+\begin{figure}
+    \centering
+    \includegraphics[width=0.3\textwidth]{figures/coverage-30--0-static1}
+    \includegraphics[width=0.3\textwidth]{figures/connectivity-50-0-static1}
+    \caption{Coverage and connectivity for a sample replication at time $t=0$}%
+    \label{fig:setup0}
+\end{figure}
+
+\subsection{Subfigures}%
+\label{sec:subfigures}
+
+\Crefrange{fig:setup1}{fig:setup2} show the distribution of the nodes in the sample setup at time $t=0$, as well as the initial coverage with a sensing radius of \SI{30}{\metre} and the communication graph for a communication range of \SI{50}{\metre}.
+
+\begin{figure}
+    \centering
+    \begin{subfigure}{0.49\linewidth}
+        \centering
+        \includegraphics[width=\textwidth]{figures/coverage-30--0-static1}
+        \caption{coverage}%
+        \label{fig:setup1}
+    \end{subfigure}
+    \begin{subfigure}{0.49\linewidth}
+        \centering
+        \includegraphics[width=\textwidth]{figures/connectivity-50-0-static1}
+        \caption{connectivity}%
+        \label{fig:setup2}
+    \end{subfigure}
+    \caption{Subfigures showing coverage and connectivity for a sample replication at time $t=0$}%
+    \label{fig:setups12}%
+\end{figure}
+
+\subsection{Tables}%
+\label{sec:tables}
+
+Short tables, e.g., \cref{tab:shorttable} are straighforward to define.
+
+\begin{table}
+    \centering
+    \begin{tabular}{llr}
+        \toprule
+        left aligned & same here & right aligned \\
+        \midrule
+        1            & 2         & 3             \\
+        4            & 5         & 6             \\
+        7            & 8         & 9             \\
+        \bottomrule
+    \end{tabular}
+    \caption{Short table}%
+    \label{tab:shorttable}
+\end{table}
+
+Multi-line cells can be set as shown in \cref{tab:SensorNetworkApplications}.
+
+\begin{table}
+    \centering
+    \begin{tabular}{>{\raggedright}p{1.8cm}p{5.4cm}p{3.4cm}}
+        \toprule
+        Class                                                                                                                               & application examples & lifetime aspects \\
+        \midrule
+        Critical, coverage                                                                                                                  &
+        Forest fire detection, flood detection, nuclear/chemical/biological attack detection, battlefield surveillance, intrusion detection &
+        $c_{ca}$/$c_{ct}$/$c_{cb}$, $c_{ln}$, $c_{la}$, $c_{lo}$                                                                                                                      \\
+        Critical, no coverage                                                                                                               &
+        Monitoring human physiological data, military monitoring of friendly forces, machine monitoring                                     &
+        $c_{cc}$, $c_{ln}$, $c_{la}$, $c_{lo}$                                                                                                                                        \\
+        Noncritical, coverage                                                                                                               &
+        Agriculture, smart buildings, habitat monitoring (sensors monitor the inhabitants in a region)                                      &
+        $c_{ac}$/$c_{tc}$/$c_{bc}$, $c_{cc}$, $c_{sd}$                                                                                                                                \\
+        Noncritical, no coverage                                                                                                            &
+        Home automation, habitat monitoring (sensors are attached to animals and monitor their health and social contacts)                  &
+        $c_{cc}$, $c_{sd}$                                                                                                                                                            \\
+        \bottomrule
+    \end{tabular}
+    \caption{Sensor network applications}%
+    \label{tab:SensorNetworkApplications}
+\end{table}
+
+\subsection{Math}%
+\label{sec:math}
+
+Simple inlined equations: $\zeta(t) = \min( \zeta_{**}(t))$.
+The same in a numbered equation, i.e.\ \cref{eq:zeta}, which states
+\begin{equation}
+    \zeta(t) =
+    \min\left(
+    \zeta_{**}(t)
+    \right)
+    \label{eq:zeta}
+    .
+\end{equation}
+
+Equations covering multiple lines should be aligned.
+Note that the numbering is added automatically, independent of whether the equation is actually referenced or not, as in
+\begin{align}
+    sd_{max}      & =
+    \max\left(
+    (t_{i+1} - t_i)
+    : \zeta(t_i) < 1, i \in [0, |T|-1]
+    \right)
+    ,                 \\
+    \psi_{sd}(t)  & =
+    \begin{cases}
+        \dfrac{\Delta t_{sd}}{sd_{max}}
+         & \text{if $sd_{max} > 0$}, \\
+        1
+         & \text{if $sd_{max} = 0$},
+    \end{cases}
+    \\
+    \zeta_{sd}(t) & =
+    \frac{
+        \psi_{sd} - cl_{sd}
+    }{
+        c_{sd} - cl_{sd}
+    }
+    .
+\end{align}
+
+\subsection{Units}%
+\label{sec:units}
+
+Units should be set using the \verb|\SI| command: the measurements show that the car was accelerating at \SI{5}{\metre\per\second\squared} until it reached its final speed of \SI{100}{\kilo\metre\per\hour}.
+Longer unitless numbers or ranges can be typeset using the \verb|\num| and \verb|\numrange| commands, respectively: The number \num{12345678} lies in the range of \numrange{10000000}{20000000}.
+
+% TODO broken in recent siunitx package:
+% \Cref{tab:si-in-tables} gives an example of how to typeset numbers and units in tables.
+%
+% \begin{table}
+%     \centering
+%     \begin{tabular}{l>{\raggedright}p{4cm}S[table-text-alignment=left,table-format=1.4e-1]s}
+%         \toprule
+%         \multicolumn{2}{l}{factor} & \multicolumn{1}{l}{value} & \multicolumn{1}{c}{unit} \\
+%         \midrule
+%         $M$ & vehicle mass & 1.3250e+3 & \kilo\gram \\
+%         $g$ & gravitational constant & 9.81 & \metre\per\second\squared \\
+%         $\vartheta$ & road grade & 0 & \degree \\
+%         $\alpha$ & & 1.1100 & \gram\per\second \\
+%         $\delta$ & & 1.9800e-6 & \gram\per\meter\cubed\second\squared \\
+%         \bottomrule
+%     \end{tabular}
+%     \caption{EMIT factors for a category 9 vehicle}%
+%     \label{tab:si-in-tables}
+% \end{table}
+
+\subsection{Algorithms}%
+\label{sec:algorithms}
+
+Based on the periodically transmitted \texttt{hello} messages, the joining node gets information about its physical neighbors and their adjacent nodes.
+\Cref{alg:H_hello} depicts the handling of \texttt{hello} messages.
+
+\begin{algorithm}
+    \begin{algorithmic}[1]
+        \REQUIRE Locally stored state of all neighbors in set $N$
+        \ENSURE Maintain neighbor set $N$ and set virtual address
+        \STATE Receive neighbor information from node $N_i$
+        \IF {$N_i \notin N$}
+        \STATE $N \gets N_i$
+        \ELSE
+        \STATE Update $N_i \in N$
+        \ENDIF
+        \IF {$P==-1$ AND (Time() $-$ OldTime) $> T_{ps}$}
+        \STATE OldTime $\gets$ Time()
+        \STATE SetMyPosition()
+        \ENDIF
+    \end{algorithmic}
+    \caption{Handle \texttt{hello} messages}%
+    \label{alg:H_hello}
+\end{algorithm}
+
+\subsection{Program Code}%
+\label{sec:code}
+
+Program code should be omitted, but if absolutely necessary, it should be set as seen in \cref{lst:code}.
+
+\begin{lstlisting}[style=txt,caption=Sample application,label=lst:code]{}
+APPLICATION("printU", 192, arg)
+{
+    // Set Priority
+    NutThreadSetPriority(16);
+    // main() loop
+    for (;;) {
+        putchar('U');
+        NutSleep(125);
+    }
+}
+\end{lstlisting}
+
+\subsection{References}%
+\label{sec:references}
+
+To further evaluate the applicability of our definition, we analyzed sensor network applications as surveyed in~\cite{akyildiz2002survey,arampatzis2005survey,khemapach2005survey}.
+Concerning the importance of different lifetime criteria, most of the application scenarios can be grouped into two main classes with two sub-classes each~\cite{dietrich2009lifetime}.
+
+\subsection{Acronyms}%
+\label{sec:acronyms}
+
+Acronyms shoud be explained when first used.
+\LaTeX helps, e.g.\ \acp{MANET} have been frequently used as examples for the development of \ac{WSN} applications.
+
+
+\subsection{TODOs and FIXMEs}%
+\label{sec:todos}
+
+You can use the the \verb|\TODO| command to add short ``sticky notes'' to your document.
+\TODO{This is what a TODO looks like}
+This will also trigger generation of a list-of-TODOs at the end of the document.
+The same goes for the \verb|\FIXME|\FIXME{This is what a FIXME looks like} command.

02-fundamentals.tex

+%! TEX root = thesis.tex
+
+\chapter{Fundamentals}%
+\label{sec:fundamentals}
+
+Fundamentals / environment and related work: 1/3
+
+\begin{itemize}
+    \item comment on employed hardware and software
+    \item describe methods and techniques that build the basis of your work
+    \item review related work(!)
+\end{itemize}

03-related-work.tex

+%! TEX root = thesis.tex
+
+\chapter{Related Work}%
+\label{sec:related_work}
+
+Developed architecture / system design / implementation: 1/3
+
+\begin{itemize}
+    \item start with a theoretical approach
+    \item describe the developed system/algorithm/method from a high-level point of view
+    \item go ahead in presenting your developments in more detail
+\end{itemize}

04-analysis.tex

+%! TEX root = thesis.tex
+
+\chapter{Analysis}%
+\label{sec:analysis}
+
+Measurement results / analysis / discussion: 1/3
+
+\begin{itemize}
+    \item whatever you have done, you must comment it, compare it to other systems, evaluate it
+    \item usually, adequate graphs help to show the benefits of your approach
+    \item caution: each result/graph must be discussed! what's the reason for this peak or why have you ovserved this effect
+\end{itemize}

05-conclusion.tex

+%! TEX root = thesis.tex
+
+\chapter{Conclusion}%
+\label{sec:conclusion}
+
+Conclusion: 1 page
+
+\begin{itemize}