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Infrastructure: Actually use latexmk

Closed Marco Ammon requested to merge my04mivo/i4thesis:latexmk into master
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$pdflatex = 'pdflatex --shell-escape %O %S';
$pdflatex = 'pdflatex -synctex=1 -interaction=nonstopmode -shell-escape';
$pdf_mode=1;
$postscript_mode=0;
$dvi_mode=0;
$latex_default_switches = '-shell-escape';
add_cus_dep('gplt','tex', 0, 'makegnu2tex');
sub makegnu2tex {
system("gnuplot \"$_[0].gplt\"") ;
}
$clean_ext .= 'xdy synctex.gz bbl tdo loa lol run.xml %R-blx.bib';
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